CH662, Winter 2018
Homework
Homework 1
Assignment
Key
Completed lectures
Lecture 1
Lecture: Molecular biologists make models
My notes
Lecture 2
Pre-class reading: Purcell, 1977
Lecture: Life at small scales
My notes
Derivation of dG
Lecture 3
Pre-class reading: excepert from van Holde, Johnson, Ho
Lecture: the partition function
My notes
Lecture 4
Download pymol
Pymol excercise
Lecture 5
Lecture: protein structure
Amino acid sheet
Lecture 6
Lecture: nucleic acid structure
Lecture 7
Lecture: linking structure and thermodynamics
My notes
In class material: ala.pdb
In class material: ala-gln-ala.pdb
In class material: transfer-free-energy.xlsx
In class material: prompt
Lecture 9
Lecture: MD simulations and enenergetic decomposition
In class material: prompt
Lecture 10
Lecture: Binding and specificity in steroid receptors
In class material: prompt
Future lectures